I am not sure what is going on with that then. Just to be sure, are you adding the photos to both places? Or, are you possibly uploading them to just the profile and thinking that they will also appear in the Site's photo collections? You have to upload them to both to be clear. They are separate from each other.
If you are uploading to both, and it's still not working properly, I'd put in a support ticket to see if something could possibly be wrong.